Molybdenum in PDB 9bed: Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Protein crystallography data
The structure of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound, PDB code: 9bed
was solved by
D.Zhou,
J.P.Rose,
L.Chen,
B.C.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.36 /
2.02
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.713,
74.713,
156.01,
90,
90,
90
|
R / Rfree (%)
|
15.1 /
20.5
|
Molybdenum Binding Sites:
The binding sites of Molybdenum atom in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
(pdb code 9bed). This binding sites where shown within
5.0 Angstroms radius around Molybdenum atom.
In total 8 binding sites of Molybdenum where determined in the
Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound, PDB code: 9bed:
Jump to Molybdenum binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Molybdenum binding site 1 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 1 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 1 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo101
b:17.6
occ:1.00
|
MO
|
A:MOO101
|
0.0
|
17.6
|
1.0
|
O1
|
A:MOO101
|
1.7
|
11.4
|
1.0
|
O2
|
A:MOO101
|
1.7
|
18.0
|
1.0
|
O3
|
A:MOO101
|
1.7
|
23.3
|
1.0
|
O4
|
A:MOO101
|
1.8
|
16.4
|
1.0
|
HG3
|
A:LYS60
|
3.0
|
20.4
|
1.0
|
H
|
D:SER40
|
3.2
|
16.7
|
1.0
|
HG2
|
A:ARG6
|
3.2
|
29.8
|
1.0
|
HA
|
A:ALA5
|
3.3
|
23.8
|
1.0
|
H
|
A:ALA61
|
3.3
|
20.4
|
1.0
|
HZ2
|
A:LYS60
|
3.4
|
15.5
|
1.0
|
HB
|
D:ILE39
|
3.4
|
21.0
|
1.0
|
HG22
|
D:ILE39
|
3.5
|
18.5
|
1.0
|
HG2
|
A:LYS60
|
3.5
|
20.4
|
1.0
|
H
|
A:ARG6
|
3.5
|
20.3
|
1.0
|
O
|
A:SER4
|
3.6
|
19.6
|
1.0
|
CG
|
A:LYS60
|
3.7
|
17.0
|
1.0
|
HG
|
D:SER40
|
3.8
|
23.3
|
1.0
|
HA
|
D:ILE39
|
3.8
|
23.9
|
1.0
|
HE2
|
A:LYS60
|
3.8
|
17.3
|
1.0
|
HB3
|
A:ALA61
|
3.9
|
19.3
|
1.0
|
HB2
|
A:SER4
|
3.9
|
22.9
|
1.0
|
HA
|
A:LYS60
|
4.0
|
18.1
|
1.0
|
HG
|
D:SER43
|
4.0
|
40.0
|
1.0
|
N
|
D:SER40
|
4.0
|
13.9
|
1.0
|
CB
|
D:ILE39
|
4.1
|
17.5
|
1.0
|
C
|
A:SER4
|
4.1
|
19.0
|
1.0
|
CA
|
A:ALA5
|
4.1
|
19.8
|
1.0
|
CG2
|
D:ILE39
|
4.1
|
15.4
|
1.0
|
N
|
A:ALA61
|
4.1
|
17.0
|
1.0
|
HE
|
A:ARG6
|
4.1
|
40.4
|
1.0
|
N
|
A:ARG6
|
4.2
|
16.9
|
1.0
|
HG
|
A:SER4
|
4.2
|
24.3
|
1.0
|
NZ
|
A:LYS60
|
4.2
|
12.9
|
1.0
|
O
|
D:HOH231
|
4.2
|
18.2
|
1.0
|
CG
|
A:ARG6
|
4.2
|
24.9
|
1.0
|
OG
|
A:SER4
|
4.2
|
20.2
|
1.0
|
HB3
|
D:SER40
|
4.2
|
24.0
|
1.0
|
HG2
|
F:MET65
|
4.2
|
23.9
|
1.0
|
HG21
|
D:ILE39
|
4.3
|
18.5
|
1.0
|
HB2
|
A:ALA61
|
4.3
|
19.3
|
1.0
|
CA
|
D:ILE39
|
4.4
|
19.9
|
1.0
|
CE
|
A:LYS60
|
4.4
|
14.4
|
1.0
|
N
|
A:ALA5
|
4.4
|
17.5
|
1.0
|
HB3
|
D:SER43
|
4.4
|
29.6
|
1.0
|
OG
|
D:SER40
|
4.5
|
19.4
|
1.0
|
HG3
|
A:ARG6
|
4.5
|
29.8
|
1.0
|
CB
|
A:SER4
|
4.5
|
19.1
|
1.0
|
CB
|
A:ALA61
|
4.5
|
16.1
|
1.0
|
HZ3
|
A:LYS60
|
4.6
|
15.5
|
1.0
|
C
|
A:ALA5
|
4.6
|
18.8
|
1.0
|
OG
|
D:SER43
|
4.6
|
33.4
|
1.0
|
CD
|
A:LYS60
|
4.7
|
16.1
|
1.0
|
H
|
A:THR62
|
4.7
|
17.8
|
1.0
|
CA
|
A:LYS60
|
4.7
|
15.1
|
1.0
|
CB
|
D:SER40
|
4.7
|
20.0
|
1.0
|
C
|
D:ILE39
|
4.8
|
19.1
|
1.0
|
HZ1
|
A:LYS60
|
4.8
|
15.5
|
1.0
|
CB
|
A:LYS60
|
4.8
|
18.6
|
1.0
|
NE
|
A:ARG6
|
4.8
|
33.7
|
1.0
|
CD
|
A:ARG6
|
4.9
|
30.7
|
1.0
|
HD2
|
A:ARG6
|
4.9
|
36.9
|
1.0
|
C
|
A:LYS60
|
4.9
|
15.4
|
1.0
|
CA
|
A:ALA61
|
5.0
|
16.8
|
1.0
|
CA
|
A:SER4
|
5.0
|
17.0
|
1.0
|
CB
|
D:SER43
|
5.0
|
24.7
|
1.0
|
HG23
|
D:ILE39
|
5.0
|
18.5
|
1.0
|
|
Molybdenum binding site 2 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 2 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 2 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo102
b:19.6
occ:1.00
|
MO
|
A:MOO102
|
0.0
|
19.6
|
1.0
|
O1
|
A:MOO102
|
1.7
|
16.6
|
1.0
|
O3
|
A:MOO102
|
1.7
|
18.1
|
1.0
|
O4
|
A:MOO102
|
1.7
|
17.2
|
1.0
|
O2
|
A:MOO102
|
1.7
|
19.8
|
1.0
|
HG22
|
C:VAL21
|
3.4
|
22.5
|
1.0
|
H
|
C:VAL21
|
3.5
|
21.4
|
1.0
|
HD22
|
A:ASN22
|
3.5
|
22.3
|
1.0
|
HD22
|
C:ASN22
|
3.5
|
21.0
|
1.0
|
HD22
|
F:ASN22
|
3.5
|
19.9
|
1.0
|
HG22
|
A:VAL21
|
3.5
|
25.4
|
1.0
|
HB3
|
F:ALA20
|
3.6
|
33.5
|
1.0
|
H
|
C:ASN22
|
3.6
|
22.4
|
1.0
|
H
|
F:VAL21
|
3.6
|
28.5
|
1.0
|
HG22
|
F:VAL21
|
3.6
|
21.4
|
1.0
|
H
|
A:VAL21
|
3.6
|
20.9
|
1.0
|
H
|
F:ALA20
|
3.6
|
32.4
|
1.0
|
H
|
C:ALA20
|
3.6
|
28.1
|
1.0
|
HB3
|
C:ALA20
|
3.7
|
23.4
|
1.0
|
HB3
|
A:ALA20
|
3.7
|
26.5
|
1.0
|
HB2
|
A:ASN22
|
3.7
|
18.8
|
1.0
|
H
|
A:ASN22
|
3.7
|
18.7
|
1.0
|
HB2
|
C:ASN22
|
3.7
|
20.1
|
1.0
|
H
|
F:ASN22
|
3.7
|
23.3
|
1.0
|
H
|
A:ALA20
|
3.8
|
24.7
|
1.0
|
HB2
|
F:ASN22
|
3.8
|
22.8
|
1.0
|
HG23
|
A:VAL21
|
4.1
|
25.4
|
1.0
|
HG23
|
F:VAL21
|
4.1
|
21.4
|
1.0
|
HG23
|
C:VAL21
|
4.2
|
22.5
|
1.0
|
CG2
|
C:VAL21
|
4.2
|
18.8
|
1.0
|
CG2
|
A:VAL21
|
4.2
|
21.1
|
1.0
|
ND2
|
A:ASN22
|
4.3
|
18.6
|
1.0
|
ND2
|
C:ASN22
|
4.3
|
17.5
|
1.0
|
CG2
|
F:VAL21
|
4.3
|
17.8
|
1.0
|
ND2
|
F:ASN22
|
4.3
|
16.6
|
1.0
|
N
|
C:VAL21
|
4.3
|
17.9
|
1.0
|
N
|
C:ASN22
|
4.3
|
18.7
|
1.0
|
N
|
A:ASN22
|
4.4
|
15.6
|
1.0
|
N
|
F:ALA20
|
4.4
|
27.0
|
1.0
|
N
|
F:VAL21
|
4.5
|
23.8
|
1.0
|
N
|
C:ALA20
|
4.5
|
23.4
|
1.0
|
N
|
A:VAL21
|
4.5
|
17.4
|
1.0
|
N
|
F:ASN22
|
4.5
|
19.4
|
1.0
|
CB
|
F:ALA20
|
4.5
|
27.9
|
1.0
|
CB
|
A:ASN22
|
4.6
|
15.7
|
1.0
|
CB
|
C:ALA20
|
4.6
|
19.5
|
1.0
|
CB
|
C:ASN22
|
4.6
|
16.8
|
1.0
|
CB
|
A:ALA20
|
4.6
|
22.1
|
1.0
|
N
|
A:ALA20
|
4.6
|
20.6
|
1.0
|
HA3
|
C:GLY19
|
4.7
|
20.9
|
1.0
|
CB
|
F:ASN22
|
4.7
|
19.0
|
1.0
|
HA3
|
F:GLY19
|
4.7
|
30.7
|
1.0
|
HG21
|
A:VAL21
|
4.7
|
25.4
|
1.0
|
HG21
|
C:VAL21
|
4.8
|
22.5
|
1.0
|
HB2
|
F:ALA20
|
4.8
|
33.5
|
1.0
|
HD21
|
A:ASN22
|
4.8
|
22.3
|
1.0
|
HD21
|
F:ASN22
|
4.8
|
19.9
|
1.0
|
HD21
|
C:ASN22
|
4.8
|
21.0
|
1.0
|
HG21
|
F:VAL21
|
4.9
|
21.4
|
1.0
|
HB2
|
A:ALA20
|
4.9
|
26.5
|
1.0
|
HB2
|
C:ALA20
|
4.9
|
23.4
|
1.0
|
HA3
|
A:GLY19
|
4.9
|
22.9
|
1.0
|
CG
|
A:ASN22
|
4.9
|
15.8
|
1.0
|
CA
|
F:ALA20
|
5.0
|
22.9
|
1.0
|
CA
|
C:ALA20
|
5.0
|
22.7
|
1.0
|
CG
|
C:ASN22
|
5.0
|
17.7
|
1.0
|
CA
|
C:ASN22
|
5.0
|
17.3
|
1.0
|
|
Molybdenum binding site 3 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 3 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 3 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo101
b:17.2
occ:1.00
|
MO
|
B:MOO101
|
0.0
|
17.2
|
1.0
|
O2
|
B:MOO101
|
1.6
|
14.3
|
1.0
|
O1
|
B:MOO101
|
1.7
|
15.3
|
1.0
|
O4
|
B:MOO101
|
1.7
|
19.6
|
1.0
|
O3
|
B:MOO101
|
1.7
|
17.5
|
1.0
|
HG3
|
B:LYS60
|
3.0
|
21.2
|
1.0
|
H
|
C:SER40
|
3.2
|
16.3
|
1.0
|
HG2
|
B:ARG6
|
3.2
|
31.9
|
1.0
|
H
|
B:ALA61
|
3.3
|
20.9
|
1.0
|
HZ2
|
B:LYS60
|
3.3
|
19.4
|
1.0
|
HA
|
B:ALA5
|
3.3
|
20.3
|
1.0
|
HG2
|
B:LYS60
|
3.4
|
21.2
|
1.0
|
HG
|
C:SER43
|
3.4
|
42.9
|
1.0
|
HB
|
C:ILE39
|
3.5
|
19.7
|
1.0
|
HG22
|
C:ILE39
|
3.5
|
20.3
|
1.0
|
HG
|
B:SER4
|
3.5
|
23.4
|
1.0
|
H
|
B:ARG6
|
3.6
|
20.1
|
1.0
|
O
|
B:SER4
|
3.6
|
17.7
|
1.0
|
CG
|
B:LYS60
|
3.6
|
17.7
|
1.0
|
HG
|
C:SER40
|
3.7
|
20.2
|
1.0
|
HB3
|
B:ALA61
|
3.8
|
22.1
|
1.0
|
HA
|
C:ILE39
|
3.8
|
22.6
|
1.0
|
HE2
|
B:LYS60
|
3.9
|
22.7
|
1.0
|
HB2
|
B:SER4
|
4.0
|
21.5
|
1.0
|
N
|
C:SER40
|
4.0
|
13.6
|
1.0
|
HA
|
B:LYS60
|
4.0
|
17.2
|
1.0
|
HE
|
B:ARG6
|
4.1
|
41.4
|
1.0
|
O
|
C:HOH238
|
4.1
|
12.2
|
1.0
|
N
|
B:ALA61
|
4.1
|
17.4
|
1.0
|
HB3
|
C:SER40
|
4.1
|
23.9
|
1.0
|
NZ
|
B:LYS60
|
4.1
|
16.1
|
1.0
|
CB
|
C:ILE39
|
4.1
|
16.4
|
1.0
|
C
|
B:SER4
|
4.1
|
21.2
|
1.0
|
N
|
B:ARG6
|
4.2
|
16.8
|
1.0
|
CA
|
B:ALA5
|
4.2
|
16.9
|
1.0
|
OG
|
B:SER4
|
4.2
|
19.5
|
1.0
|
CG
|
B:ARG6
|
4.2
|
26.6
|
1.0
|
CG2
|
C:ILE39
|
4.2
|
16.9
|
1.0
|
OG
|
C:SER43
|
4.2
|
35.8
|
1.0
|
HG2
|
E:MET65
|
4.2
|
23.5
|
1.0
|
CA
|
C:ILE39
|
4.4
|
18.8
|
1.0
|
HB2
|
B:ALA61
|
4.4
|
22.1
|
1.0
|
OG
|
C:SER40
|
4.4
|
16.9
|
1.0
|
CE
|
B:LYS60
|
4.4
|
18.9
|
1.0
|
N
|
B:ALA5
|
4.4
|
16.9
|
1.0
|
HG3
|
B:ARG6
|
4.4
|
31.9
|
1.0
|
HG21
|
C:ILE39
|
4.5
|
20.3
|
1.0
|
CB
|
B:ALA61
|
4.5
|
18.4
|
1.0
|
HZ3
|
B:LYS60
|
4.5
|
19.4
|
1.0
|
CB
|
B:SER4
|
4.5
|
17.9
|
1.0
|
HB2
|
C:SER43
|
4.5
|
31.4
|
1.0
|
C
|
B:ALA5
|
4.6
|
18.4
|
1.0
|
CB
|
C:SER40
|
4.6
|
20.0
|
1.0
|
HZ1
|
B:LYS60
|
4.6
|
19.4
|
1.0
|
H
|
B:THR62
|
4.7
|
19.1
|
1.0
|
CA
|
B:LYS60
|
4.7
|
14.3
|
1.0
|
CD
|
B:LYS60
|
4.7
|
16.8
|
1.0
|
NE
|
B:ARG6
|
4.7
|
34.5
|
1.0
|
CB
|
B:LYS60
|
4.7
|
18.3
|
1.0
|
C
|
C:ILE39
|
4.7
|
16.9
|
1.0
|
CB
|
C:SER43
|
4.9
|
26.1
|
1.0
|
CD
|
B:ARG6
|
4.9
|
26.9
|
1.0
|
HD2
|
B:ARG6
|
4.9
|
32.3
|
1.0
|
C
|
B:LYS60
|
4.9
|
19.7
|
1.0
|
CA
|
B:ALA61
|
4.9
|
19.0
|
1.0
|
CA
|
C:SER40
|
4.9
|
19.7
|
1.0
|
|
Molybdenum binding site 4 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 4 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 4 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo102
b:19.2
occ:1.00
|
MO
|
B:MOO102
|
0.0
|
19.2
|
1.0
|
O4
|
B:MOO102
|
1.7
|
14.6
|
1.0
|
O3
|
B:MOO102
|
1.7
|
18.0
|
1.0
|
O1
|
B:MOO102
|
1.7
|
21.9
|
1.0
|
O2
|
B:MOO102
|
1.7
|
18.8
|
1.0
|
HD22
|
E:ASN22
|
3.4
|
24.3
|
1.0
|
H
|
D:ALA20
|
3.5
|
25.6
|
1.0
|
HD22
|
B:ASN22
|
3.5
|
22.4
|
1.0
|
H
|
D:VAL21
|
3.5
|
23.0
|
1.0
|
HD22
|
D:ASN22
|
3.5
|
20.4
|
1.0
|
H
|
E:ALA20
|
3.6
|
26.5
|
1.0
|
HB3
|
E:ALA20
|
3.6
|
30.6
|
1.0
|
H
|
B:VAL21
|
3.6
|
26.6
|
1.0
|
HG22
|
D:VAL21
|
3.6
|
21.8
|
1.0
|
H
|
D:ASN22
|
3.6
|
19.8
|
1.0
|
H
|
E:VAL21
|
3.6
|
21.7
|
1.0
|
HG22
|
B:VAL21
|
3.6
|
23.4
|
1.0
|
H
|
B:ASN22
|
3.7
|
16.9
|
1.0
|
HB3
|
B:ALA20
|
3.7
|
22.4
|
1.0
|
HB2
|
B:ASN22
|
3.7
|
19.7
|
1.0
|
HB2
|
D:ASN22
|
3.7
|
19.3
|
1.0
|
HB3
|
D:ALA20
|
3.7
|
23.2
|
1.0
|
H
|
E:ASN22
|
3.7
|
23.8
|
1.0
|
HG22
|
E:VAL21
|
3.7
|
24.6
|
1.0
|
H
|
B:ALA20
|
3.8
|
22.7
|
1.0
|
HB2
|
E:ASN22
|
3.8
|
22.5
|
1.0
|
HG23
|
D:VAL21
|
3.9
|
21.8
|
1.0
|
HG23
|
B:VAL21
|
4.1
|
23.4
|
1.0
|
HG23
|
E:VAL21
|
4.1
|
24.6
|
1.0
|
ND2
|
E:ASN22
|
4.2
|
20.3
|
1.0
|
CG2
|
D:VAL21
|
4.2
|
18.1
|
1.0
|
CG2
|
B:VAL21
|
4.3
|
19.5
|
1.0
|
ND2
|
D:ASN22
|
4.3
|
17.0
|
1.0
|
ND2
|
B:ASN22
|
4.3
|
18.7
|
1.0
|
N
|
D:ALA20
|
4.3
|
21.3
|
1.0
|
N
|
D:VAL21
|
4.4
|
19.2
|
1.0
|
N
|
D:ASN22
|
4.4
|
16.5
|
1.0
|
N
|
E:ALA20
|
4.4
|
22.1
|
1.0
|
CG2
|
E:VAL21
|
4.4
|
20.5
|
1.0
|
N
|
B:ASN22
|
4.4
|
14.1
|
1.0
|
N
|
B:VAL21
|
4.4
|
22.1
|
1.0
|
N
|
E:VAL21
|
4.5
|
18.1
|
1.0
|
CB
|
E:ALA20
|
4.5
|
25.5
|
1.0
|
N
|
E:ASN22
|
4.5
|
19.8
|
1.0
|
HA3
|
D:GLY19
|
4.6
|
21.6
|
1.0
|
CB
|
D:ASN22
|
4.6
|
16.1
|
1.0
|
N
|
B:ALA20
|
4.6
|
18.9
|
1.0
|
CB
|
B:ASN22
|
4.6
|
16.4
|
1.0
|
CB
|
D:ALA20
|
4.6
|
19.3
|
1.0
|
CB
|
B:ALA20
|
4.6
|
18.6
|
1.0
|
HD21
|
E:ASN22
|
4.6
|
24.3
|
1.0
|
CB
|
E:ASN22
|
4.7
|
18.8
|
1.0
|
HB2
|
E:ALA20
|
4.7
|
30.6
|
1.0
|
HA3
|
E:GLY19
|
4.7
|
27.8
|
1.0
|
HG21
|
D:VAL21
|
4.8
|
21.8
|
1.0
|
HD21
|
D:ASN22
|
4.8
|
20.4
|
1.0
|
HG21
|
B:VAL21
|
4.9
|
23.4
|
1.0
|
HA3
|
B:GLY19
|
4.9
|
22.6
|
1.0
|
HD21
|
B:ASN22
|
4.9
|
22.4
|
1.0
|
HB2
|
D:ALA20
|
4.9
|
23.2
|
1.0
|
CA
|
E:ALA20
|
4.9
|
23.2
|
1.0
|
CA
|
D:ALA20
|
4.9
|
20.6
|
1.0
|
CG
|
E:ASN22
|
4.9
|
13.3
|
1.0
|
CG
|
D:ASN22
|
5.0
|
15.9
|
1.0
|
HG21
|
E:VAL21
|
5.0
|
24.6
|
1.0
|
HB2
|
B:ALA20
|
5.0
|
22.4
|
1.0
|
CG
|
B:ASN22
|
5.0
|
14.1
|
1.0
|
|
Molybdenum binding site 5 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 5 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 5 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mo101
b:19.0
occ:1.00
|
MO
|
C:MOO101
|
0.0
|
19.0
|
1.0
|
O4
|
C:MOO101
|
1.7
|
19.2
|
1.0
|
O1
|
C:MOO101
|
1.7
|
20.5
|
1.0
|
O3
|
C:MOO101
|
1.7
|
16.0
|
1.0
|
O2
|
C:MOO101
|
1.7
|
20.6
|
1.0
|
HG3
|
C:LYS60
|
3.2
|
19.2
|
1.0
|
H
|
B:SER40
|
3.2
|
19.4
|
1.0
|
HG2
|
C:ARG6
|
3.2
|
32.4
|
1.0
|
HZ1
|
C:LYS60
|
3.3
|
17.9
|
1.0
|
H
|
C:ALA61
|
3.3
|
20.6
|
1.0
|
HA
|
C:ALA5
|
3.3
|
18.7
|
1.0
|
HB
|
B:ILE39
|
3.5
|
24.0
|
1.0
|
H
|
C:ARG6
|
3.5
|
22.8
|
1.0
|
HG22
|
B:ILE39
|
3.5
|
19.7
|
1.0
|
HG2
|
C:LYS60
|
3.5
|
19.2
|
1.0
|
HG
|
C:SER4
|
3.6
|
22.4
|
1.0
|
O
|
C:SER4
|
3.6
|
19.9
|
1.0
|
HG
|
B:SER40
|
3.7
|
18.8
|
1.0
|
HA
|
B:ILE39
|
3.8
|
25.5
|
1.0
|
CG
|
C:LYS60
|
3.8
|
16.0
|
1.0
|
HB3
|
C:ALA61
|
3.9
|
26.6
|
1.0
|
HB2
|
C:SER4
|
4.0
|
24.7
|
1.0
|
HE2
|
C:LYS60
|
4.0
|
18.4
|
1.0
|
N
|
B:SER40
|
4.0
|
16.2
|
1.0
|
HA
|
C:LYS60
|
4.0
|
19.3
|
1.0
|
HG
|
B:SER43
|
4.1
|
32.3
|
1.0
|
HB3
|
B:SER40
|
4.1
|
19.2
|
1.0
|
NZ
|
C:LYS60
|
4.1
|
14.9
|
1.0
|
N
|
C:ARG6
|
4.1
|
19.0
|
1.0
|
CG
|
C:ARG6
|
4.1
|
27.0
|
1.0
|
N
|
C:ALA61
|
4.1
|
17.2
|
1.0
|
CB
|
B:ILE39
|
4.1
|
20.0
|
1.0
|
CA
|
C:ALA5
|
4.1
|
15.6
|
1.0
|
C
|
C:SER4
|
4.1
|
20.5
|
1.0
|
HE
|
C:ARG6
|
4.2
|
36.7
|
1.0
|
CG2
|
B:ILE39
|
4.2
|
16.4
|
1.0
|
O
|
B:HOH222
|
4.2
|
16.1
|
1.0
|
OG
|
C:SER4
|
4.3
|
18.7
|
1.0
|
HG2
|
A:MET65
|
4.3
|
24.2
|
1.0
|
HB3
|
B:SER43
|
4.3
|
28.1
|
1.0
|
HB2
|
C:ALA61
|
4.3
|
26.6
|
1.0
|
HG3
|
C:ARG6
|
4.3
|
32.4
|
1.0
|
CA
|
B:ILE39
|
4.4
|
21.3
|
1.0
|
OG
|
B:SER40
|
4.4
|
15.6
|
1.0
|
N
|
C:ALA5
|
4.4
|
18.0
|
1.0
|
HZ2
|
C:LYS60
|
4.4
|
17.9
|
1.0
|
CE
|
C:LYS60
|
4.5
|
15.4
|
1.0
|
CB
|
C:ALA61
|
4.5
|
22.1
|
1.0
|
HG21
|
B:ILE39
|
4.5
|
19.7
|
1.0
|
CB
|
C:SER4
|
4.6
|
20.6
|
1.0
|
C
|
C:ALA5
|
4.6
|
16.7
|
1.0
|
CB
|
B:SER40
|
4.6
|
16.0
|
1.0
|
H
|
C:THR62
|
4.7
|
18.6
|
1.0
|
HZ3
|
C:LYS60
|
4.7
|
17.9
|
1.0
|
C
|
B:ILE39
|
4.7
|
19.5
|
1.0
|
CA
|
C:LYS60
|
4.8
|
16.1
|
1.0
|
CD
|
C:LYS60
|
4.8
|
15.8
|
1.0
|
OG
|
B:SER43
|
4.8
|
26.9
|
1.0
|
NE
|
C:ARG6
|
4.8
|
30.6
|
1.0
|
CB
|
C:LYS60
|
4.9
|
19.1
|
1.0
|
CB
|
B:SER43
|
4.9
|
23.4
|
1.0
|
CD
|
C:ARG6
|
4.9
|
26.5
|
1.0
|
HB2
|
C:ARG6
|
4.9
|
30.0
|
1.0
|
CA
|
C:ALA61
|
4.9
|
20.4
|
1.0
|
CA
|
B:SER40
|
5.0
|
16.9
|
1.0
|
C
|
C:LYS60
|
5.0
|
15.1
|
1.0
|
HD2
|
C:ARG6
|
5.0
|
31.8
|
1.0
|
CB
|
C:ARG6
|
5.0
|
25.0
|
1.0
|
HB2
|
B:SER43
|
5.0
|
28.1
|
1.0
|
|
Molybdenum binding site 6 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 6 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 6 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mo101
b:18.6
occ:1.00
|
MO
|
D:MOO101
|
0.0
|
18.6
|
1.0
|
O4
|
D:MOO101
|
1.7
|
15.8
|
1.0
|
O3
|
D:MOO101
|
1.7
|
19.8
|
1.0
|
O1
|
D:MOO101
|
1.7
|
16.6
|
1.0
|
O2
|
D:MOO101
|
1.7
|
17.8
|
1.0
|
HG3
|
D:LYS60
|
3.1
|
21.9
|
1.0
|
H
|
A:SER40
|
3.2
|
20.8
|
1.0
|
H
|
D:ALA61
|
3.2
|
22.6
|
1.0
|
HA
|
D:ALA5
|
3.4
|
24.5
|
1.0
|
HZ3
|
D:LYS60
|
3.4
|
22.5
|
1.0
|
HB
|
A:ILE39
|
3.4
|
25.4
|
1.0
|
HG22
|
A:ILE39
|
3.5
|
24.1
|
1.0
|
HG
|
D:SER4
|
3.5
|
22.6
|
1.0
|
HG2
|
D:LYS60
|
3.5
|
21.9
|
1.0
|
HG
|
A:SER43
|
3.5
|
34.6
|
1.0
|
O
|
D:SER4
|
3.6
|
18.8
|
1.0
|
HG
|
A:SER40
|
3.6
|
25.6
|
1.0
|
CG
|
D:LYS60
|
3.8
|
18.2
|
1.0
|
HA
|
A:ILE39
|
3.8
|
23.4
|
1.0
|
HB3
|
D:ALA61
|
3.8
|
25.0
|
1.0
|
HE2
|
D:LYS60
|
3.9
|
23.2
|
1.0
|
HB2
|
D:SER4
|
4.0
|
21.6
|
1.0
|
N
|
A:SER40
|
4.0
|
17.4
|
1.0
|
HA
|
D:LYS60
|
4.0
|
22.2
|
1.0
|
N
|
D:ALA61
|
4.1
|
18.8
|
1.0
|
C
|
D:SER4
|
4.1
|
21.2
|
1.0
|
CG
|
D:ARG6
|
4.1
|
20.6
|
1.0
|
CB
|
A:ILE39
|
4.1
|
21.2
|
1.0
|
CG2
|
A:ILE39
|
4.1
|
20.1
|
1.0
|
O
|
F:HOH222
|
4.1
|
22.4
|
1.0
|
NZ
|
D:LYS60
|
4.2
|
18.7
|
1.0
|
N
|
D:ARG6
|
4.2
|
18.6
|
1.0
|
CA
|
D:ALA5
|
4.2
|
20.4
|
1.0
|
HB3
|
A:SER40
|
4.2
|
24.1
|
1.0
|
HB2
|
D:ALA61
|
4.2
|
25.0
|
1.0
|
OG
|
D:SER4
|
4.2
|
18.8
|
1.0
|
HG21
|
A:ILE39
|
4.3
|
24.1
|
1.0
|
HG2
|
B:MET65
|
4.3
|
25.9
|
1.0
|
OG
|
A:SER43
|
4.3
|
28.9
|
1.0
|
CA
|
A:ILE39
|
4.4
|
19.5
|
1.0
|
N
|
D:ALA5
|
4.4
|
18.4
|
1.0
|
CB
|
D:ALA61
|
4.4
|
20.8
|
1.0
|
CE
|
D:LYS60
|
4.4
|
19.3
|
1.0
|
OG
|
A:SER40
|
4.4
|
21.3
|
1.0
|
HZ1
|
D:LYS60
|
4.5
|
22.5
|
1.0
|
HB2
|
A:SER43
|
4.5
|
29.0
|
1.0
|
CB
|
D:SER4
|
4.5
|
18.0
|
1.0
|
C
|
D:ALA5
|
4.6
|
22.2
|
1.0
|
H
|
D:THR62
|
4.7
|
19.8
|
1.0
|
CB
|
A:SER40
|
4.7
|
20.1
|
1.0
|
CD
|
D:LYS60
|
4.7
|
17.1
|
1.0
|
C
|
A:ILE39
|
4.7
|
21.8
|
1.0
|
CA
|
D:LYS60
|
4.7
|
18.5
|
1.0
|
HZ2
|
D:LYS60
|
4.8
|
22.5
|
1.0
|
CB
|
D:LYS60
|
4.9
|
18.2
|
1.0
|
CA
|
D:ALA61
|
4.9
|
17.8
|
1.0
|
CB
|
A:SER43
|
4.9
|
24.1
|
1.0
|
C
|
D:LYS60
|
4.9
|
16.7
|
1.0
|
NE
|
D:ARG6
|
4.9
|
35.0
|
1.0
|
CB
|
D:ARG6
|
4.9
|
23.4
|
1.0
|
CD
|
D:ARG6
|
5.0
|
25.1
|
1.0
|
CA
|
D:SER4
|
5.0
|
21.2
|
1.0
|
HG23
|
A:ILE39
|
5.0
|
24.1
|
1.0
|
CA
|
A:SER40
|
5.0
|
15.8
|
1.0
|
|
Molybdenum binding site 7 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 7 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 7 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mo101
b:20.2
occ:1.00
|
MO
|
E:MOO101
|
0.0
|
20.2
|
1.0
|
O3
|
E:MOO101
|
1.7
|
21.9
|
1.0
|
O2
|
E:MOO101
|
1.7
|
14.6
|
1.0
|
O4
|
E:MOO101
|
1.7
|
20.4
|
1.0
|
O1
|
E:MOO101
|
1.7
|
21.5
|
1.0
|
H
|
F:SER40
|
3.2
|
23.4
|
1.0
|
HG3
|
E:LYS60
|
3.2
|
18.6
|
1.0
|
HG2
|
E:ARG6
|
3.2
|
29.8
|
1.0
|
H
|
E:ALA61
|
3.2
|
23.5
|
1.0
|
HA
|
E:ALA5
|
3.3
|
25.7
|
1.0
|
HZ2
|
E:LYS60
|
3.4
|
19.3
|
1.0
|
HB
|
F:ILE39
|
3.4
|
25.6
|
1.0
|
HG22
|
F:ILE39
|
3.6
|
24.6
|
1.0
|
HG2
|
E:LYS60
|
3.6
|
18.6
|
1.0
|
O
|
E:SER4
|
3.6
|
23.2
|
1.0
|
HG
|
F:SER40
|
3.6
|
27.5
|
1.0
|
H
|
E:ARG6
|
3.6
|
26.7
|
1.0
|
HG
|
F:SER43
|
3.6
|
28.7
|
1.0
|
HA
|
F:ILE39
|
3.8
|
21.3
|
1.0
|
HB3
|
E:ALA61
|
3.8
|
20.2
|
1.0
|
CG
|
E:LYS60
|
3.8
|
15.5
|
1.0
|
HE2
|
E:LYS60
|
3.9
|
22.1
|
1.0
|
N
|
F:SER40
|
4.0
|
19.5
|
1.0
|
HB2
|
E:SER4
|
4.0
|
29.1
|
1.0
|
HA
|
E:LYS60
|
4.1
|
23.9
|
1.0
|
N
|
E:ALA61
|
4.1
|
19.6
|
1.0
|
CB
|
F:ILE39
|
4.1
|
21.3
|
1.0
|
HG
|
E:SER4
|
4.1
|
25.0
|
1.0
|
C
|
E:SER4
|
4.1
|
25.7
|
1.0
|
CG
|
E:ARG6
|
4.1
|
24.8
|
1.0
|
O
|
C:HOH232
|
4.1
|
18.3
|
1.0
|
NZ
|
E:LYS60
|
4.1
|
16.1
|
1.0
|
CA
|
E:ALA5
|
4.2
|
21.4
|
1.0
|
HD3
|
E:ARG6
|
4.2
|
35.3
|
1.0
|
CG2
|
F:ILE39
|
4.2
|
20.5
|
1.0
|
HB3
|
F:SER40
|
4.2
|
24.4
|
1.0
|
N
|
E:ARG6
|
4.2
|
22.3
|
1.0
|
HB2
|
E:ALA61
|
4.2
|
20.2
|
1.0
|
OG
|
E:SER4
|
4.3
|
20.9
|
1.0
|
HD2
|
E:ARG6
|
4.3
|
35.3
|
1.0
|
HG2
|
D:MET65
|
4.3
|
25.4
|
1.0
|
CA
|
F:ILE39
|
4.3
|
17.7
|
1.0
|
OG
|
F:SER40
|
4.4
|
22.9
|
1.0
|
HG21
|
F:ILE39
|
4.4
|
24.6
|
1.0
|
HZ3
|
E:LYS60
|
4.4
|
19.3
|
1.0
|
N
|
E:ALA5
|
4.4
|
22.0
|
1.0
|
CB
|
E:ALA61
|
4.4
|
16.8
|
1.0
|
OG
|
F:SER43
|
4.4
|
23.9
|
1.0
|
CE
|
E:LYS60
|
4.4
|
18.4
|
1.0
|
CD
|
E:ARG6
|
4.4
|
29.4
|
1.0
|
HB2
|
F:SER43
|
4.5
|
26.6
|
1.0
|
HG3
|
E:ARG6
|
4.5
|
29.8
|
1.0
|
CB
|
E:SER4
|
4.6
|
24.2
|
1.0
|
C
|
E:ALA5
|
4.7
|
24.6
|
1.0
|
H
|
E:THR62
|
4.7
|
20.5
|
1.0
|
CB
|
F:SER40
|
4.7
|
20.4
|
1.0
|
C
|
F:ILE39
|
4.7
|
23.1
|
1.0
|
CA
|
E:LYS60
|
4.8
|
19.9
|
1.0
|
CD
|
E:LYS60
|
4.8
|
17.7
|
1.0
|
HZ1
|
E:LYS60
|
4.8
|
19.3
|
1.0
|
CA
|
E:ALA61
|
4.9
|
19.9
|
1.0
|
CB
|
E:LYS60
|
4.9
|
17.1
|
1.0
|
CB
|
F:SER43
|
4.9
|
22.1
|
1.0
|
C
|
E:LYS60
|
4.9
|
17.2
|
1.0
|
|
Molybdenum binding site 8 out
of 8 in 9bed
Go back to
Molybdenum Binding Sites List in 9bed
Molybdenum binding site 8 out
of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 8 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mo101
b:19.2
occ:1.00
|
MO
|
F:MOO101
|
0.0
|
19.2
|
1.0
|
O1
|
F:MOO101
|
1.7
|
13.1
|
1.0
|
O3
|
F:MOO101
|
1.7
|
18.3
|
1.0
|
O4
|
F:MOO101
|
1.7
|
20.4
|
1.0
|
O2
|
F:MOO101
|
1.7
|
15.9
|
1.0
|
HG3
|
F:LYS60
|
3.2
|
20.8
|
1.0
|
H
|
E:SER40
|
3.2
|
22.8
|
1.0
|
H
|
F:ALA61
|
3.2
|
20.3
|
1.0
|
HG3
|
F:ARG6
|
3.3
|
24.7
|
1.0
|
HZ3
|
F:LYS60
|
3.3
|
24.9
|
1.0
|
HA
|
F:ALA5
|
3.4
|
25.5
|
1.0
|
O
|
F:SER4
|
3.4
|
21.5
|
1.0
|
HB
|
E:ILE39
|
3.4
|
23.2
|
1.0
|
HG2
|
F:LYS60
|
3.6
|
20.8
|
1.0
|
HG22
|
E:ILE39
|
3.6
|
23.5
|
1.0
|
HG
|
E:SER43
|
3.6
|
19.9
|
1.0
|
H
|
F:ARG6
|
3.7
|
21.9
|
1.0
|
HG
|
F:SER4
|
3.7
|
25.9
|
1.0
|
HA
|
E:ILE39
|
3.7
|
20.7
|
1.0
|
HG
|
E:SER40
|
3.8
|
24.1
|
1.0
|
CG
|
F:LYS60
|
3.8
|
17.4
|
1.0
|
HE2
|
F:LYS60
|
3.8
|
19.9
|
1.0
|
HB3
|
F:ALA61
|
3.9
|
19.9
|
1.0
|
HB2
|
F:SER4
|
3.9
|
27.2
|
1.0
|
C
|
F:SER4
|
4.0
|
22.4
|
1.0
|
N
|
E:SER40
|
4.0
|
19.0
|
1.0
|
O
|
D:HOH225
|
4.0
|
18.5
|
1.0
|
HA
|
F:LYS60
|
4.0
|
21.9
|
1.0
|
N
|
F:ALA61
|
4.1
|
16.9
|
1.0
|
CB
|
E:ILE39
|
4.1
|
19.4
|
1.0
|
NZ
|
F:LYS60
|
4.1
|
20.7
|
1.0
|
HB2
|
F:ALA61
|
4.1
|
19.9
|
1.0
|
CA
|
F:ALA5
|
4.2
|
21.3
|
1.0
|
HB3
|
E:SER40
|
4.2
|
22.1
|
1.0
|
CG2
|
E:ILE39
|
4.2
|
19.6
|
1.0
|
CG
|
F:ARG6
|
4.2
|
20.6
|
1.0
|
N
|
F:ARG6
|
4.2
|
18.3
|
1.0
|
OG
|
F:SER4
|
4.2
|
21.6
|
1.0
|
HZ1
|
F:LYS60
|
4.3
|
24.9
|
1.0
|
HG2
|
F:ARG6
|
4.3
|
24.7
|
1.0
|
HG21
|
E:ILE39
|
4.3
|
23.5
|
1.0
|
CA
|
E:ILE39
|
4.3
|
17.3
|
1.0
|
HG2
|
C:MET65
|
4.3
|
20.2
|
1.0
|
CE
|
F:LYS60
|
4.4
|
16.6
|
1.0
|
N
|
F:ALA5
|
4.4
|
19.8
|
1.0
|
CB
|
F:ALA61
|
4.4
|
16.6
|
1.0
|
OG
|
E:SER43
|
4.4
|
16.5
|
1.0
|
OG
|
E:SER40
|
4.5
|
20.1
|
1.0
|
HB2
|
E:SER43
|
4.5
|
22.2
|
1.0
|
CB
|
F:SER4
|
4.5
|
22.6
|
1.0
|
H
|
F:THR62
|
4.6
|
19.5
|
1.0
|
C
|
F:ALA5
|
4.7
|
22.9
|
1.0
|
CB
|
E:SER40
|
4.7
|
18.4
|
1.0
|
C
|
E:ILE39
|
4.7
|
18.2
|
1.0
|
CD
|
F:LYS60
|
4.7
|
15.5
|
1.0
|
CA
|
F:LYS60
|
4.8
|
18.3
|
1.0
|
HZ2
|
F:LYS60
|
4.8
|
24.9
|
1.0
|
CA
|
F:ALA61
|
4.9
|
22.6
|
1.0
|
CB
|
F:LYS60
|
4.9
|
18.6
|
1.0
|
HD2
|
F:ARG6
|
4.9
|
34.4
|
1.0
|
CB
|
E:SER43
|
4.9
|
18.5
|
1.0
|
HB2
|
F:ARG6
|
4.9
|
24.7
|
1.0
|
C
|
F:LYS60
|
4.9
|
16.8
|
1.0
|
CA
|
F:SER4
|
5.0
|
24.9
|
1.0
|
|
Reference:
D.Zhou,
J.P.Rose,
L.Chen,
B.C.Wang.
Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with Eight Molybdates Bound To Be Published.
Page generated: Sun Oct 6 17:44:55 2024
|