Molybdenum in PDB 9cjb: Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover

All present enzymatic activity of Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover:
1.18.6.1;

The structure of Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover also contains other interesting chemical elements:

Iron

(Fe)

32 atoms

The binding sites of Molybdenum atom in the Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover (pdb code 9cjb). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover, PDB code: 9cjb:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo600 b:104.6 occ:1.00 MO1 A:ICS600 0.0 104.6 1.0 S4B A:ICS600 2.4 80.2 1.0 S1B A:ICS600 2.4 74.8 1.0 S3B A:ICS600 2.4 78.2 1.0 FE6 A:ICS600 2.7 90.0 1.0 FE7 A:ICS600 2.7 87.3 1.0 O A:HOH833 2.8 58.1 1.0 FE5 A:ICS600 2.8 87.9 1.0 CX A:ICS600 3.5 75.2 1.0 CZ2 A:TRP444 4.3 50.5 1.0 CE2 A:TRP444 4.3 50.5 1.0 NE1 A:TRP444 4.4 50.1 1.0 NH1 A:ARG96 4.6 38.4 1.0 S2B A:ICS600 4.8 78.9 1.0 S5A A:ICS600 4.8 81.4 1.0 CH2 A:TRP444 4.9 55.2 1.0 CD2 A:TRP444 4.9 54.8 1.0 S3A A:ICS600 4.9 82.7 1.0

Molybdenum binding site 2 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of Nitrogenase Mofe-Protein 60 Minute Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo600 b:112.2 occ:1.00 MO1 C:ICS600 0.0 112.2 1.0 S4B C:ICS600 2.4 78.5 1.0 S1B C:ICS600 2.4 79.8 1.0 S3B C:ICS600 2.4 83.5 1.0 FE6 C:ICS600 2.7 89.5 1.0 FE7 C:ICS600 2.7 92.4 1.0 FE5 C:ICS600 2.8 88.0 1.0 CX C:ICS600 3.6 74.7 1.0 O C:HOH827 3.6 55.9 1.0 S2B C:ICS600 4.7 80.5 1.0 CZ2 C:TRP444 4.8 47.6 1.0 S5A C:ICS600 4.8 81.9 1.0 S3A C:ICS600 5.0 80.9 1.0

R.A.Warmack, D.C.Rees. Structural Evolution of Nitrogenase States Under Alkaline Turnover. Nat Commun V. 15 10472 2024.
ISSN: ESSN 2041-1723
PubMed: 39622820
DOI: 10.1038/S41467-024-54713-0