Molybdenum in PDB 9cjc: Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover

All present enzymatic activity of Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover:
1.18.6.1;

The structure of Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover also contains other interesting chemical elements:

Iron

(Fe)

32 atoms

The binding sites of Molybdenum atom in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover (pdb code 9cjc). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover, PDB code: 9cjc:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo600 b:32.0 occ:1.00 MO1 A:ICS600 0.0 32.0 1.0 O5 A:HCA601 2.2 17.8 1.0 O7 A:HCA601 2.2 22.2 1.0 ND1 A:HIS442 2.3 15.9 1.0 S1B A:ICS600 2.4 16.9 1.0 S4B A:ICS600 2.4 21.9 1.0 S3B A:ICS600 2.4 17.0 1.0 FE6 A:ICS600 2.7 32.8 1.0 FE7 A:ICS600 2.7 39.1 1.0 FE5 A:ICS600 2.7 32.4 1.0 C7 A:HCA601 3.0 16.5 1.0 C3 A:HCA601 3.1 20.9 1.0 CE1 A:HIS442 3.2 15.5 1.0 CG A:HIS442 3.4 14.8 1.0 CX A:ICS600 3.6 14.0 1.0 CB A:HIS442 3.7 18.3 1.0 C2 A:HCA601 4.0 17.6 1.0 O6 A:HCA601 4.1 19.1 1.0 O A:HOH760 4.2 15.2 1.0 C4 A:HCA601 4.2 18.5 1.0 NE2 A:HIS442 4.4 23.8 1.0 C5 A:HCA601 4.4 21.3 1.0 O2 A:HCA601 4.4 23.0 1.0 CA A:HIS442 4.5 17.1 1.0 CD2 A:HIS442 4.5 16.1 1.0 C1 A:HCA601 4.7 22.7 1.0 S2B A:ICS600 4.8 36.0 1.0 S5A A:ICS600 4.8 25.9 1.0 S3A A:ICS600 4.9 14.1 1.0 O4 A:HCA601 4.9 28.8 1.0

Molybdenum binding site 2 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of Nitrogenase Mofe-Protein 20 Minute Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo600 b:75.3 occ:1.00 MO1 C:ICS600 0.0 75.3 1.0 S4B C:ICS600 2.4 54.9 1.0 S1B C:ICS600 2.4 56.0 1.0 S3B C:ICS600 2.4 56.5 1.0 FE7 C:ICS600 2.7 65.8 1.0 FE6 C:ICS600 2.7 63.8 1.0 FE5 C:ICS600 2.7 62.9 1.0 CZ2 C:TRP444 3.3 38.5 1.0 CE2 C:TRP444 3.6 36.6 1.0 CX C:ICS600 3.6 50.8 1.0 CH2 C:TRP444 3.7 35.6 1.0 NE1 C:TRP444 4.0 36.8 1.0 CD2 C:TRP444 4.2 33.9 1.0 CZ3 C:TRP444 4.3 34.9 1.0 CE3 C:TRP444 4.6 35.0 1.0 S2B C:ICS600 4.8 53.5 1.0 CD1 C:TRP444 4.8 35.4 1.0 S5A C:ICS600 4.8 54.4 1.0 S3A C:ICS600 4.9 58.1 1.0 NE C:ARG96 4.9 20.9 1.0 CG C:TRP444 5.0 35.2 1.0

R.A.Warmack, D.C.Rees. Structural Evolution of Nitrogenase States Under Alkaline Turnover. Nat Commun V. 15 10472 2024.
ISSN: ESSN 2041-1723
PubMed: 39622820
DOI: 10.1038/S41467-024-54713-0