Molybdenum in PDB 9cjd: Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover

All present enzymatic activity of Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover:
1.18.6.1;

The structure of Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover also contains other interesting chemical elements:

Iron

(Fe)

32 atoms

The binding sites of Molybdenum atom in the Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover (pdb code 9cjd). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover, PDB code: 9cjd:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo600 b:27.3 occ:1.00 MO1 A:ICS600 0.0 27.3 1.0 O5 A:HCA601 2.2 18.2 1.0 O7 A:HCA601 2.2 8.7 1.0 ND1 A:HIS442 2.3 11.7 1.0 S1B A:ICS600 2.4 19.6 1.0 S4B A:ICS600 2.4 19.9 1.0 S3B A:ICS600 2.4 17.1 1.0 FE6 A:ICS600 2.7 32.6 1.0 FE7 A:ICS600 2.7 26.7 1.0 FE5 A:ICS600 2.7 24.8 1.0 C7 A:HCA601 3.0 9.8 1.0 C3 A:HCA601 3.1 14.9 1.0 CE1 A:HIS442 3.2 12.4 1.0 CG A:HIS442 3.4 14.4 1.0 CX A:ICS600 3.6 11.1 1.0 CB A:HIS442 3.8 17.1 1.0 O A:HOH743 3.9 13.8 1.0 C2 A:HCA601 4.1 12.6 1.0 O6 A:HCA601 4.1 13.8 1.0 O1 A:HCA601 4.2 27.1 1.0 C4 A:HCA601 4.2 14.4 1.0 NE2 A:HIS442 4.4 23.6 1.0 C5 A:HCA601 4.4 13.7 1.0 CA A:HIS442 4.5 14.2 1.0 CD2 A:HIS442 4.5 12.9 1.0 C1 A:HCA601 4.6 15.8 1.0 S2B A:ICS600 4.8 35.4 1.0 S5A A:ICS600 4.8 20.7 1.0 S3A A:ICS600 4.9 13.9 1.0

Molybdenum binding site 2 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of Nitrogenase Mofe-Protein 5 Minute Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo600 b:79.8 occ:1.00 MO1 C:ICS600 0.0 79.8 1.0 S4B C:ICS600 2.4 53.4 1.0 S1B C:ICS600 2.4 57.9 1.0 S3B C:ICS600 2.4 56.0 1.0 CD2 C:HIS442 2.7 40.9 1.0 FE7 C:ICS600 2.7 58.9 1.0 FE6 C:ICS600 2.7 63.1 1.0 FE5 C:ICS600 2.7 65.4 1.0 CG C:HIS442 2.8 38.2 1.0 CB C:HIS442 3.2 42.0 1.0 NE2 C:HIS442 3.2 40.6 1.0 ND1 C:HIS442 3.4 42.1 1.0 CX C:ICS600 3.6 49.8 1.0 CE1 C:HIS442 3.6 43.4 1.0 CA C:HIS442 4.0 39.6 1.0 S2B C:ICS600 4.8 57.1 1.0 S5A C:ICS600 4.8 56.7 1.0 C C:HIS442 4.9 37.0 1.0 S3A C:ICS600 4.9 59.3 1.0

R.A.Warmack, D.C.Rees. Structural Evolution of Nitrogenase States Under Alkaline Turnover. Nat Commun V. 15 10472 2024.
ISSN: ESSN 2041-1723
PubMed: 39622820
DOI: 10.1038/S41467-024-54713-0