Molybdenum in PDB 9cje: Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover

All present enzymatic activity of Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover:
1.18.6.1;

The structure of Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover also contains other interesting chemical elements:

Iron

(Fe)

32 atoms

The binding sites of Molybdenum atom in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover (pdb code 9cje). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover, PDB code: 9cje:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo501 b:56.8 occ:1.00 MO1 A:ICS501 0.0 56.8 1.0 O7 A:HCA502 2.2 30.6 1.0 O5 A:HCA502 2.2 36.5 1.0 ND1 A:HIS442 2.3 31.2 1.0 S4B A:ICS501 2.4 23.3 1.0 S1B A:ICS501 2.4 33.8 1.0 S3B A:ICS501 2.4 17.7 1.0 FE6 A:ICS501 2.7 42.5 1.0 FE7 A:ICS501 2.7 37.3 1.0 FE5 A:ICS501 2.7 52.2 1.0 C7 A:HCA502 3.0 29.2 1.0 CE1 A:HIS442 3.1 27.9 1.0 C3 A:HCA502 3.1 29.2 1.0 CG A:HIS442 3.4 27.8 1.0 CX A:ICS501 3.6 30.4 1.0 CB A:HIS442 3.8 21.3 1.0 C4 A:HCA502 4.1 25.6 1.0 O6 A:HCA502 4.2 33.5 1.0 O A:HOH687 4.2 14.1 1.0 C2 A:HCA502 4.2 29.3 1.0 O1 A:HCA502 4.2 32.5 1.0 C5 A:HCA502 4.2 23.2 1.0 NE2 A:HIS442 4.3 32.0 1.0 CD2 A:HIS442 4.5 28.9 1.0 CA A:HIS442 4.5 18.1 1.0 C1 A:HCA502 4.7 32.1 1.0 S2B A:ICS501 4.8 22.7 1.0 S5A A:ICS501 4.8 26.6 1.0 S3A A:ICS501 4.9 29.0 1.0

Molybdenum binding site 2 out of 2 in the Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of Nitrogenase Mofe-Protein 20 Second Time Point Under Alkaline Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo600 b:86.7 occ:1.00 MO1 C:ICS600 0.0 86.7 1.0 S4B C:ICS600 2.4 59.4 1.0 S1B C:ICS600 2.4 63.3 1.0 S3B C:ICS600 2.4 59.5 1.0 FE6 C:ICS600 2.7 67.4 1.0 FE7 C:ICS600 2.7 70.0 1.0 FE5 C:ICS600 2.7 70.9 1.0 ND1 C:HIS442 2.8 51.4 1.0 CX C:ICS600 3.6 61.0 1.0 CG C:HIS442 3.6 49.7 1.0 CB C:HIS442 3.7 45.8 1.0 CE1 C:HIS442 3.7 50.0 1.0 CA C:HIS442 4.3 47.1 1.0 CD2 C:HIS442 4.7 49.9 1.0 NE C:ARG96 4.7 32.4 1.0 S2B C:ICS600 4.8 64.2 1.0 NE2 C:HIS442 4.8 49.8 1.0 S5A C:ICS600 4.8 54.8 1.0 S3A C:ICS600 4.9 65.2 1.0 O C:HIS442 4.9 47.4 1.0

R.A.Warmack, D.C.Rees. Structural Evolution of Nitrogenase States Under Alkaline Turnover. Nat Commun V. 15 10472 2024.
ISSN: ESSN 2041-1723
PubMed: 39622820
DOI: 10.1038/S41467-024-54713-0